Once everything is tight, row through the gears to ensure everything feels normal. You should make your adjustments now before re-installing the console.

Depending on how you adjust the shifter, the offset / front wishbone may contact the stock shift boot surround. The console has slotted holes so you can loosen the screws and push the console as forward as it will go and then tighten the screws. That should give a few more millimeters of clearance.

You can loosen the offset and rotate it to your preference or driving position. You can also loosen the other bolt to raise or lower the knob height.